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Recommended Antimicrobial Prophylaxis for Urologic Procedures (AUA guidelines 2008)

Procedure Organisms Prophylaxis Indicated Antimicrobial(s) of Choice Alternative Antimicrobial(s) Duration of Therapy*
Lower Tract Instrumentation
Removal of external urinary catheter GU tract†  If risk factors‡,§
  • Fluoroquinolone
  • TMP-SMX
  • Aminoglycoside (Aztreonam¥) ± Ampicillin
  • 1st/2nd gen. Cephalosporin
  • Amoxacillin/Clavulanate
≤24hours
Cystography, urodynamic study, or simple cystourethroscopy GU tract t If risk factors§
  • Fluoroquinolone
  • TMP-SMX
  • Aminoglycoside (Aztreonam¥) ± Ampicillin
  • 1st/2nd gen. Cephalosporin
  • Amoxacillin/ Clavulanate
≤24hours
Cystourethroscopy with manipulation  GU tract All
  • Fluoroquinolone
  • TMP-SMX
  • Aminoglycoside (Aztreonam¥) ± Ampicillin
  • 1st/2nd gen. Cephalosporin
  • Amoxacillin/ Clavulanate
≤24hours
Prostate brachytherapy or cryotherapy Skin Uncertain
  • 1st gen. Cephalosporin
  • Clindamycin**
≤24hours
Transrectal prostate biopsy Intestine††  All
  • Fluoroquinolone
  • 1st/2nd/3rd gen. Cephalosporin
  • Aminoglycoside (Aztreonam¥)+ Metronidazole or Clindamycin**
≤24hours
Upper Tract Instrumentation
Shock-wave lithotripsy GU tract  All
  • Fluoroquinolone
  • TMP-SMX 
  • Aminoglycoside (Aztreonam¥) ± Ampicillin
  • 1st/2nd gen. Cephalosporin
  • Amoxacillin/ Clavulanate
≤24hours
Percutaneous renal surgery GU tract and skin‡‡  All 
  • 1st/2nd gen. Cephalosporin
  • Aminoglycoside (Aztreonam¥) + Metronidazole or Clindamycin
  • Ampicillin/Sulbactam
  • Fluoroquinolone
≤24hours
Ureteroscopy GU Tract All
  • Fluoroquinolone
  • TMP-SMX 
  • Aminoglycoside (Aztreonam¥) ± Ampicillin
  • 1st/2nd gen. Cephalosporin
  • Amoxacillin/Clavulanate
≤24hours
Open or Laparoscopic Surgery
Vaginal surgery (includes urethral sling procedures) GU tract, skin and Grp B Strep All
  • 1st/2nd gen. Cephalosporin
  • Aminoglycoside (Aztreonam¥) + Metronidazole or Clindamycin
  • Ampicillin/Sulbactam
  • Fluoroquinolone
≤24hours
Without entering urinary tract Skin If risk actors
  • 1st gen. Cephalosporin
  • Clindamycin
Single dose
Involving entry into urinary tract GU tract and skin  All
  • 1st/2nd gen. Cephalosporin
  • Aminoglycoside (Aztreonam¥) + Metronidazole or Clindamycin
  • Ampicillin/Sulbactam
  • Fluoroquinolone
≤24hours
Involving intestine §§ GU tract, skin and intestine All
  • 2nd/3rd gen. Cephalosporin
  • Aminoglycoside (Aztreonam¥) + Metronidazole or Clindamycin
  • Ampicillin/Sulbactam
  • Ticarcillin/Clavulanate
  • Pipercillin/Tazobactam
  • Fluoroquinolone
≤24hours
Involving implanted prosthesis GU tract and skin All
  • Aminoglycoside (Aztreonam ¥)+1st/2nd gen. Cephalosporin or Vancomycin
  • Ampicillin/Sulbactam
  • Ticarcillin/Clavulanate
  • Pipercillin/Tazobactam
≤24hours

Order of agents in each column is not indicative of preference. The absence of an agent does not preclude its appropriate use depending on specific situations.

Key: gen, generation; Grp, group; GU, genitourinary; TMPSMX, trimethoprimsulfamethoxazole. * Additional antimicrobial therapy may be recommended at the time of removal of an externalized urinary catheter. † GU tract: Common urinary tract organisms are E. coli, Proteus sp., Klebsiella sp., Enterococcus. ‡ See “Patientrelated factors affecting host respo ¶nse to surgical infections.” If urine culture shows no growth prior to the procedure, antimicrobial prophylaxis is not necessary. Or full course of culture-directed antimicrobials for documented infection (which is treatment, not prophylaxis). ¥Aztreonam can be substituted for aminoglycosides in patients with renal insufficiency. _ Includes transurethral resection of bladder tumor and prostate, and any biopsy, resection, fulguration, foreign body removal, urethral dilation or urethrotomy, or ureteral instrumentation including catheterization or stent placement/removal. **Clindamycin, or aminoglycoside+ metronidazole or clindamycin, are general alternatives to penicillins and cephalosporins in patients with penicillin allergy, even when not specifically listed. †† Intestine: Common intestinal organisms are E. coli, Klebsiella sp., Enterobacter, Serratia sp., Proteus sp., Enterococcus, and Anaerobes. ‡‡ Skin: Common skin organisms are S. aureus, coagulase negative Staph. sp., Group A Strep. sp. For surgery involving the colon, bowel preparation with oral neomycin plus either erythromycin base or metronidazole can be added to or substituted for systemic agents. Copyright ⓒ 2008 American Urological Association Education and Research, Inc.Ⓡ Revised July 31, 2008